Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192401_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 95735344 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 208479 | 0.21776596948353788 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 196450 | 0.20520112195972262 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 146516 | 0.15304274667880233 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 123765 | 0.0 | 51.340603 | 1 |
GTATCAA | 204960 | 0.0 | 37.460655 | 1 |
GAGTACA | 233555 | 0.0 | 34.66724 | 1 |
AGTACAT | 245755 | 0.0 | 32.146675 | 2 |
GTACATG | 354600 | 0.0 | 32.012928 | 1 |
TACATGG | 362675 | 0.0 | 30.874535 | 2 |
CAACGCA | 248990 | 0.0 | 30.183422 | 5 |
ATCAACG | 251290 | 0.0 | 29.738098 | 3 |
TCAACGC | 264995 | 0.0 | 28.537716 | 4 |
ACATGGG | 387550 | 0.0 | 28.376133 | 3 |
AACGCAG | 271395 | 0.0 | 27.981081 | 6 |
TATCAAC | 272885 | 0.0 | 27.82993 | 2 |
CTAACGC | 15905 | 0.0 | 26.089418 | 3 |
CTAGTAC | 38335 | 0.0 | 25.9736 | 3 |
CATGGGG | 311900 | 0.0 | 25.707119 | 4 |
TAACGCC | 16090 | 0.0 | 25.207333 | 4 |
GTACTAG | 28960 | 0.0 | 25.00633 | 1 |
CTGTGCG | 40325 | 0.0 | 24.524912 | 9 |
GTGGTAT | 46115 | 0.0 | 23.951935 | 1 |
TCTAACG | 16935 | 0.0 | 23.701206 | 2 |