FastQCFastQC Report
Mon 2 May 2016
SRR3192399_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192399_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76795926
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT8671021.1290989576712702No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT6165940.8028993621354341No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG3690190.48051897961358003No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG2847210.3707501358861146No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC2662650.3467176110357729No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT2563460.33380156129636357No Hit
CACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCAT2169340.28248113057455676No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA2150340.280007040998503No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA2119400.2759781814467606No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT1531730.19945459085941616No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT1335730.1739324036538084No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1332030.17345060726268213No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1279800.16664946523335106No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAA1199510.156194483545911No Hit
GCCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATA1104700.1438487765614025No Hit
GTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTT970870.1264220708791245No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC909360.11841253141475239No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA838820.1092271483255505No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG797880.10389613636535876No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATAC783650.032.6863394
CTCGCTA394900.029.28936
GTCCGTT74100.028.8018111
CGCTATG402400.028.7312168
GTCTGGA1048350.028.5998421
GTCTCGC406700.028.5990894
ACAGCCC3268150.028.33692494
TCGCTAT422900.027.4176987
CAGCCCA2388400.027.08990194
GTGGGTA513250.025.9499551
GCCCCTC517950.024.9504131
TGGAGTC1084600.024.9490034
GGAGTCT1124900.024.2599035
GAGTCTT1161750.023.500296
TACAGCC3382950.023.26420892-93
GTCCGAT67950.023.1577721
GCGCACT3458500.022.85005686-87
TAGCGCA3516400.022.49920784-85
GCACTAC3546400.022.28452188-89
AGTCTTG1228500.022.2127027