FastQCFastQC Report
Tue 3 May 2016
SRR3192400_2_val_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192400_2_val_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94925479
Sequences flagged as poor quality0
Sequence length20-100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA1108750.046.2097051
GTATCAA1929800.037.484291
GTACATG3579900.033.3841441
GAGTACA2198150.033.149061
TACATGG3653650.032.281932
CAACGCA2208750.031.7837435
ATCAACG2266550.031.0129453
AGTACAT2324700.030.4542522
TCAACGC2372950.029.8670044
ACATGGG3885650.029.8482973
AACGCAG2368600.029.8115356
CTAGTAC388150.029.1813893
TATCAAC2456650.029.0161932
CTAACGC158250.028.9728373
TAACGCC156750.028.6040764
CATGGGG3100600.027.7123684
CTGTGCG399000.027.4580869
GTACTAG293200.026.5473961
TCTAACG170600.026.3118252
ACGCAGA2780700.025.0563837