Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192657_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 93555584 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAGGTCG | 10140 | 0.0 | 23.838547 | 7 |
TAACACG | 16075 | 0.0 | 20.059437 | 7 |
TAGTGCG | 18970 | 0.0 | 19.14111 | 78-79 |
GTCTAAC | 17270 | 0.0 | 19.027264 | 4 |
AACACGT | 18355 | 0.0 | 17.80064 | 8 |
GGCGCGT | 33670 | 0.0 | 17.558622 | 5 |
GTACTCG | 29235 | 0.0 | 16.406319 | 28-29 |
TACGCAC | 27005 | 0.0 | 15.874449 | 50-51 |
TATGCCG | 25020 | 0.0 | 14.899127 | 86-87 |
AGCGCTC | 35770 | 0.0 | 14.511587 | 9 |
TCGTAAG | 11165 | 0.0 | 14.419154 | 6 |
CGCGTGC | 43675 | 0.0 | 13.602676 | 7 |
CCAGTAG | 41135 | 0.0 | 13.402473 | 5 |
CGGTACA | 33245 | 0.0 | 13.3823595 | 60-61 |
ATCGCAC | 39525 | 0.0 | 13.310622 | 68-69 |
TCTCCGG | 66100 | 0.0 | 13.262611 | 6 |
TAGCATA | 43755 | 0.0 | 13.187494 | 9 |
TGGCGCG | 43835 | 0.0 | 13.172711 | 4 |
CGATCGC | 40610 | 0.0 | 13.101585 | 66-67 |
TGCGAAT | 33225 | 0.0 | 13.044593 | 74-75 |