Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192658_2_val_2.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 97071168 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-101 |
%GC | 52 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACT | 176034 | 0.1813452991520613 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTAAC | 18770 | 0.0 | 22.14842 | 4 |
TAACACG | 19015 | 0.0 | 22.10635 | 7 |
AACACGT | 20995 | 0.0 | 19.758718 | 8 |
TCTCCGG | 97450 | 0.0 | 19.684504 | 6 |
AGCGCTC | 40205 | 0.0 | 18.60037 | 9 |
CTCTCCG | 108230 | 0.0 | 17.939526 | 5 |
TTATCCG | 44515 | 0.0 | 16.82995 | 8 |
TAGGTCG | 7635 | 0.0 | 16.56498 | 7 |
TCCGGCC | 118905 | 0.0 | 16.49245 | 8 |
AGTCTAA | 27305 | 0.0 | 15.612624 | 3 |
TATCCGG | 49035 | 0.0 | 15.354073 | 9 |
GTACTCG | 29650 | 0.0 | 15.176545 | 28-29 |
ACGTCTC | 28905 | 0.0 | 15.023978 | 20-21 |
GAGTCTA | 29580 | 0.0 | 14.986772 | 2 |
CTCCGGC | 135020 | 0.0 | 14.707937 | 7 |
ATCGCAC | 79175 | 0.0 | 14.650377 | 68-69 |
ACCCATT | 75795 | 0.0 | 14.480742 | 94-95 |
CGCAGTT | 54750 | 0.0 | 14.480504 | 1 |
CTAACAC | 29465 | 0.0 | 14.390986 | 6 |
CGATCGC | 81790 | 0.0 | 14.25297 | 66-67 |