FastQCFastQC Report
Tue 3 May 2016
SRR3192398_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192398_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68765938
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT7110091.0339552119539182No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT5029400.7313795385151294No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG3167690.460648119131306No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC2347900.3414335742791729No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT2213760.32192682371321685No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG2210270.3214193050053356No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA2109340.3067419803100773No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA2053710.29865221935895064No Hit
CACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCAT1739290.25292900098301574No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1457640.211971223311169No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT1290780.18770630308278496No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1288780.18741546141637738No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAA1264890.1839413577111389No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT1132950.16475453297823117No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1056540.15364292711312974No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC928640.13504360254636533No Hit
GCCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATA874660.12719378597002487No Hit
GTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTT827070.12027320851785663No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA818120.11897169206068273No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATAC704900.032.01159394
GTCTGGA904750.029.247261
CTCGCTA348200.027.4808126
GTCCGTT63450.027.3970661
GTCTCGC356550.026.8881684
ACAGCCC2854750.026.6792794
CGCTATG377350.025.4946638
TGGAGTC965450.024.6645154
CAGCCCA2135250.024.62600594
TCGCTAT394100.024.4121237
GCCCCTC429950.024.2806971
GGAGTCT989150.024.1353175
TATACCC603900.023.54596594
GAGTCTT1030750.023.2357446
GTGGGTA476850.023.1571521
GTCCGAT61050.022.6866821
TCTGGAG1103250.022.6470322
GTCTTGG1078950.022.2105588
AGTCTTG1082050.022.0262417
TACAGCC2934750.021.98554892-93